STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2436PFAM: O-antigen polymerase; KEGG: spe:Spro_4678 O-antigen polymerase. (894 aa)    
Predicted Functional Partners:
Plim_2437
PFAM: glycosyl transferase family 4; KEGG: dal:Dalk_0708 glycosyl transferase family 4.
 
   
 0.847
Plim_2435
PFAM: protein of unknown function DUF1573; KEGG: gur:Gura_3399 hypothetical protein.
 
     0.770
Plim_1336
Membrane protein-like protein.
  
     0.758
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.756
Plim_4190
NolW domain protein; KEGG: similar to ELKS/RAB6-interacting/CAST family member 2.
  
     0.752
Plim_1805
Hypothetical protein.
  
     0.747
Plim_1011
Hypothetical protein; KEGG: hne:HNE_2881 alpha/beta fold family hydrolase.
 
     0.731
Plim_0394
KEGG: mno:Mnod_7207 hypothetical protein.
  
     0.728
Plim_0641
KEGG: SNF2 superfamily protein; Belongs to the bacterial secretin family.
  
     0.726
Plim_2465
PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_2468 putative transport protein.
  
     0.722
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.