Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2439PFAM: protein of unknown function DUF502; KEGG: pmy:Pmen_4298 hypothetical protein. (239 aa)    
Predicted Functional Partners:
Plim_1424
Hypothetical protein; KEGG: smt:Smal_2395 porin.
  
     0.570
Plim_3065
Hypothetical protein.
  
     0.533
Plim_3645
Helix-turn-helix domain protein.
  
     0.498
Plim_1504
PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE2499 hypothetical protein.
  
     0.465
Plim_0071
PFAM: phosphatidate cytidylyltransferase; KEGG: hypothetical protein.
  
     0.434
Plim_3545
Portal protein lambda.
  
     0.428
Plim_3612
Phage terminase-like protein protein large subunit-like protein.
  
     0.402
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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