STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2474TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: mxa:MXAN_2626 DNA internalization-related competence protein ComEC/Rec2. (879 aa)    
Predicted Functional Partners:
Plim_0049
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: hha:Hhal_2324 DNA protecting protein DprA.
 
  
 0.927
Plim_3203
Amidophosphoribosyltransferase family protein.
 
  
 0.865
Plim_2762
PAS sensor protein.
  
  
 0.747
Plim_1574
PFAM: peptidase A24A domain protein; KEGG: aba:Acid345_1591 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A.
  
  
 0.710
Plim_1841
PFAM: peptidase A24A domain protein; KEGG: afr:AFE_0186 type IV pilus prepilin peptidase PilD.
  
  
 0.710
Plim_2271
PFAM: peptidase A24A prepilin type IV; KEGG: vvu:VV1_1623 type 4 prepilin-like proteins leader peptide processing enzyme.
  
  
 0.710
Plim_0678
Ammonium transporter; KEGG: pla:Plav_1427 integral membrane sensor signal transduction histidine kinase; TIGRFAM: ammonium transporter; PAS sensor protein; PFAM: Rh family protein/ammonium transporter; ATP- binding region ATPase domain protein; Hpt domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein.
  
    0.663
ruvA
Helix-hairpin-helix motif protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
 
   
 0.654
Plim_0159
Mg chelatase, subunit ChlI; KEGG: gsu:GSU0489 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
  
 0.629
Plim_0674
TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: mxa:MXAN_4688 single-stranded-DNA-specific exonuclease RecJ.
 
   
 0.610
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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