Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2478Hypothetical protein; KEGG: bha:BH0045 signal peptidase-like protein. (198 aa)    
Predicted Functional Partners:
Plim_4071
Spermine synthase.
  
     0.684
Plim_1336
Membrane protein-like protein.
  
     0.628
Plim_3766
Hypothetical protein.
  
     0.620
Plim_3354
TPR repeat-containing protein.
  
     0.576
Plim_2465
PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_2468 putative transport protein.
  
    0.568
Plim_1355
KEGG: sus:Acid_7772 hypothetical protein.
  
     0.527
Plim_1407
TIGRFAM: heme-binding protein; KEGG: pca:Pcar_0624 L-sorbosone dehydrogenase.
  
    0.523
Plim_1969
PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: mgm:Mmc1_1055 dTDP-4-dehydrorhamnose reductase.
  
     0.515
Plim_1668
KEGG: ade:Adeh_2066 hypothetical protein.
  
     0.507
Plim_2029
Hypothetical protein; KEGG: bca:BCE_A0190 cytochrome c biogenesis protein, putative.
  
     0.477
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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