STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rtcBPFAM: protein of unknown function UPF0027; KEGG: scl:sce1954 hypothetical protein; Belongs to the RtcB family. (514 aa)    
Predicted Functional Partners:
Plim_4039
Conserved hypothetical protein.
   
    0.601
deaD
DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
   
 0.469
Plim_1686
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: bcy:Bcer98_0234 DEAD/DEAH box helicase domain- containing protein; Belongs to the DEAD box helicase family.
   
 0.469
Plim_1514
KEGG: scl:sce6902 polyA polymerase related protein.
 
     0.432
Plim_2496
Hypothetical protein; KEGG: cco:CCC13826_1571 tRNA(Ile)-lysidine synthase.
       0.427
Plim_0506
PFAM: TROVE domain protein; KEGG: pfl:PFL_2303 60-kDa SS-A/Ro ribonucleoprotein.
 
     0.400
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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