STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_2534Redoxin domain protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (167 aa)    
Predicted Functional Partners:
Plim_3497
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.845
Plim_1992
PFAM: ABC-3 protein; iron dependent repressor; SMART: iron dependent repressor; KEGG: rce:RC1_2462 zinc transport system membrane protein TroD.
  
  
 0.535
Plim_1993
PFAM: ABC-3 protein; iron dependent repressor; KEGG: rce:RC1_2461 zinc transport system membrane protein TroC.
  
  
 0.535
Plim_1524
PFAM: ThiJ/PfpI domain protein; KEGG: dvm:DvMF_0594 intracellular protease, PfpI family.
  
 
 0.532
Plim_2535
Hypothetical protein.
       0.526
Plim_2533
TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: sus:Acid_5778 tRNA-processing RNAse BN.
       0.477
mnmG
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
     
 0.477
Plim_1633
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: scl:sce7636 thioredoxin-disulfide reductase.
  
  
 0.419
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
  
 0.418
Plim_0434
PFAM: peptidase S24 and S26 domain protein; KEGG: aph:APH_0802 signal peptidase I; Belongs to the peptidase S26 family.
   
    0.402
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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