Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_25695-oxoprolinase (ATP-hydrolyzing). (1382 aa)    
Predicted Functional Partners:
Plim_3208
Gamma-glutamyltransferase; KEGG: hypothetical protein LOC750510.
    
 0.923
Plim_2694
Glutamate synthase (NADH).
    
 0.846
Plim_1670
PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: dal:Dalk_3943 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
  0.834
Plim_4195
Aldehyde Dehydrogenase.
  
 
  0.834
Plim_3854
Phosphoribosylformylglycinamidine synthase.
    
  0.804
Plim_2693
Glutamate synthase, NADH/NADPH, small subunit.
    
  0.801
Plim_0683
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: afw:Anae109_4400 glutamine synthetase, type I.
     
  0.800
glsA
PFAM: Glutaminase, core; KEGG: xau:Xaut_1163 glutaminase; Belongs to the glutaminase family.
     
  0.800
glsA-2
PFAM: Glutaminase, core; KEGG: ypb:YPTS_1986 glutaminase, core; Belongs to the glutaminase family.
     
  0.800
Plim_1921
PFAM: glutamine synthetase catalytic region; KEGG: dvl:Dvul_1805 glutamine synthetase, catalytic region.
     
  0.800
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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