STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2585alpha-L-glutamate ligase, RimK family; Belongs to the RimK family. (324 aa)    
Predicted Functional Partners:
mch
Methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
     0.919
Plim_2407
PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: lch:Lcho_3148 triphosphoribosyl-dephospho-CoA protein.
     0.815
Plim_3754
Methylenetetrahydrofolate dehydrogenase (NADP(+)).
 
     0.668
Plim_1421
PFAM: glutamate synthase alpha subunit domain protein; KEGG: msl:Msil_2403 formylmethanofuran dehydrogenase subunit C.
 
     0.661
Plim_2022
PFAM: protein of unknown function DUF201; KEGG: lch:Lcho_3151 hypothetical protein.
 
     0.659
Plim_2423
TIGRFAM: beta-ribofuranosylaminobenzene 5'- phosphate synthase family; PFAM: GHMP kinase; KEGG: bxe:Bxe_B2430 beta-ribofuranosylaminobenzene 5'-phosphate synthase.
 
     0.648
Plim_1687
TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: Amidohydrolase 3; KEGG: noc:Noc_0024 DNA/RNA non-specific endonuclease.
 
     0.636
ffsA
Formylmethanofuran/tetrahydromethanopterin N- formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.632
Plim_2035
PFAM: dihydropteroate synthase DHPS; KEGG: mca:MCA1245 pterin-binding domain-containing protein.
  
     0.631
Plim_2424
PFAM: protein of unknown function DUF447; KEGG: mrd:Mrad2831_2726 hypothetical protein.
  
     0.621
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.