Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_2614Protein of unknown function DUF1355. (256 aa)    
Predicted Functional Partners:
Plim_2612
Sugar isomerase (SIS).
 
     0.850
Plim_2131
KEGG: nme:NMB1094 hypothetical protein.
  
     0.727
pfp-2
Phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.
 
     0.695
Plim_3019
Hypothetical protein; KEGG: Spty2d1, RGD1560454_predicted; SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae).
  
     0.600
Plim_2128
Bacteriophage capsid protein-like protein; KEGG: xfa:XF0510 hypothetical protein.
  
     0.599
Plim_0782
KEGG: hypothetical protein LOC763622.
  
     0.559
Plim_3875
Endonuclease/exonuclease/phosphatase; KEGG: hypothetical protein LOC100150481.
  
     0.476
Plim_3628
FG-GAP repeat protein.
  
     0.472
Plim_2270
PFAM: protein of unknown function DUF901; KEGG: dal:Dalk_3715 protein of unknown function DUF901.
  
     0.457
Plim_2530
PFAM: Ankyrin; SMART: Ankyrin; KEGG: hypothetical protein.
  
     0.455
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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