Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_2623Alpha/beta hydrolase fold-3 domain protein. (325 aa)    
Predicted Functional Partners:
Plim_2624
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
       0.757
Plim_2589
Alpha/beta hydrolase fold-3 domain protein.
  
     0.727
Plim_1922
Dipeptidyl aminopeptidase/acylaminoacyl- peptidase-like protein; KEGG: hch:HCH_01563 esterase/lipase.
  
     0.719
Plim_1434
Esterase/lipase-like protein; KEGG: bra:BRADO1504 putative para-nitrobenzyl esterase.
  
     0.682
msrQ
Oxidoreductase FAD-binding domain protein; Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of [...]
  
 
   0.525
Plim_1562
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: hch:HCH_01563 esterase/lipase.
  
     0.492
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
       0.461
Plim_1672
6-deoxyerythronolide-B synthase., (Acyl-carrier- protein) S-malonyltransferase; PFAM: Beta-ketoacyl synthase; peptidase C45 acyl- coenzyme A:6-aminopenicillanic acid acyl-transferase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; KEGG: acp:A2cp1_4042 beta-ketoacyl synthase.
  
 
 0.456
Plim_3862
NADH-quinone oxidoreductase, F subunit.
    
   0.428
Plim_3863
Ferredoxin.
    
   0.428
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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