Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_2631UbiA prenyltransferase. (302 aa)    
Predicted Functional Partners:
Plim_1549
PFAM: TatD-related deoxyribonuclease; KEGG: cvi:CV_2836 hypothetical protein.
 
   
 0.791
Plim_1548
KEGG: cvi:CV_2835 hypothetical protein.
 
   
 0.790
Plim_1148
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pfl:PFL_5545 type I phosphodiesterase/nucleotide pyrophosphatase family protein.
 
     0.784
Plim_3643
Conserved hypothetical protein.
  
     0.775
Plim_3316
Xylose isomerase domain protein TIM barrel.
 
     0.762
Plim_1797
PFAM: Myo-inositol-1-phosphate synthase GAPDH domain protein; Myo-inositol-1-phosphate synthase; KEGG: sfu:Sfum_1982 inositol-3-phosphate synthase.
 
     0.702
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
    0.591
Plim_0713
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; sulfatase; KEGG: sus:Acid_3473 type I phosphodiesterase/nucleotide pyrophosphatase.
 
     0.522
Plim_1439
Hypothetical protein; KEGG: rme:Rmet_0747 putative membrane-bound dehydrogenase oxidoreductase protein.
  
     0.500
Plim_3461
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.492
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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