STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2652Restriction endonuclease S subunits-like protein. (413 aa)    
Predicted Functional Partners:
Plim_2651
Site-specific DNA-methyltransferase (adenine- specific); KEGG: bma:BMAA1451.2 hypothetical protein.
 
 
 0.998
Plim_1221
Site-specific DNA-methyltransferase (adenine- specific); PFAM: N-6 DNA methylase; KEGG: dol:Dole_2236 N-6 DNA methylase.
 
 
 0.981
Plim_2656
EcoEI R domain protein; KEGG: bte:BTH_II2095 diaminopimelate decarboxylase, putative.
 
 
 0.966
Plim_2653
AAA-4 family protein.
 
    0.912
Plim_1217
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.852
Plim_3711
SMC domain protein.
  
    0.790
Plim_2655
Conserved hypothetical protein; KEGG: swi:Swit_0769 short chain dehydrogenase.
  
    0.772
Plim_0344
PFAM: AAA-4 family protein; KEGG: ajs:Ajs_2526 putative transcriptional regulator.
  
    0.604
Plim_2654
Type III restriction protein res subunit.
       0.520
atpF
ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
    
 
 0.487
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.