STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2653AAA-4 family protein. (470 aa)    
Predicted Functional Partners:
Plim_0908
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: ppd:Ppro_2518 ATP-dependent DNA helicase RecG.
     
  0.900
Plim_2651
Site-specific DNA-methyltransferase (adenine- specific); KEGG: bma:BMAA1451.2 hypothetical protein.
 
     0.801
Plim_2652
Restriction endonuclease S subunits-like protein.
 
     0.798
Plim_2656
EcoEI R domain protein; KEGG: bte:BTH_II2095 diaminopimelate decarboxylase, putative.
 
    0.596
Plim_2654
Type III restriction protein res subunit.
       0.543
Plim_2655
Conserved hypothetical protein; KEGG: swi:Swit_0769 short chain dehydrogenase.
       0.477
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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