STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2655Conserved hypothetical protein; KEGG: swi:Swit_0769 short chain dehydrogenase. (352 aa)    
Predicted Functional Partners:
Plim_2652
Restriction endonuclease S subunits-like protein.
  
    0.829
Plim_2651
Site-specific DNA-methyltransferase (adenine- specific); KEGG: bma:BMAA1451.2 hypothetical protein.
  
    0.827
Plim_1217
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.812
Plim_2656
EcoEI R domain protein; KEGG: bte:BTH_II2095 diaminopimelate decarboxylase, putative.
       0.796
Plim_1220
PFAM: restriction modification system DNA specificity domain; KEGG: dar:Daro_1307 restriction modification system DNA specificity subunit.
  
    0.718
Plim_1221
Site-specific DNA-methyltransferase (adenine- specific); PFAM: N-6 DNA methylase; KEGG: dol:Dole_2236 N-6 DNA methylase.
  
    0.715
Plim_2654
Type III restriction protein res subunit.
       0.610
Plim_2653
AAA-4 family protein.
       0.477
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.