STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2720Lipolytic protein G-D-S-L family. (455 aa)    
Predicted Functional Partners:
Plim_2416
Hypothetical protein; KEGG: sus:Acid_2651 putative O-antigen related protein.
 
     0.972
Plim_2734
Membrane-bound dehydrogenase domain protein.
  
     0.728
Plim_3151
Protein of unknown function DUF303 acetylesterase putative; KEGG: proteophosphoglycan 5.
  
     0.727
Plim_0665
Hypothetical protein; KEGG: pen:PSEEN1886 arylesterase.
  
     0.725
Plim_3308
Heme-binding protein.
  
     0.703
Plim_1723
TIGRFAM: heme-binding protein; KEGG: mrd:Mrad2831_3094 glucose/sorbosone dehydrogenase-like protein.
  
     0.699
Plim_0666
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: mfa:Mfla_1033 L-sorbosone dehydrogenase, putative.
  
     0.661
Plim_1450
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.658
Plim_0777
Hypothetical protein; KEGG: sus:Acid_1077 alpha/beta hydrolase domain- containing protein.
  
     0.650
Plim_4048
Cycloartenol synthase-like protein.
  
     0.630
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.