Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2746PBS lyase HEAT domain protein repeat-containing protein. (483 aa)    
Predicted Functional Partners:
Plim_2418
KEGG: swi:Swit_3221 hypothetical protein.
  
     0.684
Plim_3645
Helix-turn-helix domain protein.
  
     0.637
Plim_3067
YD repeat protein; KEGG: bpm:BURPS1710b_1103 hypothetical protein.
  
     0.625
Plim_1036
AmoP; SMART: AMOP; KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.608
Plim_2019
PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A2712 major facilitator transporter.
  
     0.524
Plim_3169
Hypothetical protein.
 
     0.504
Plim_0542
PFAM: metallophosphoesterase; KEGG: hypothetical protein.
  
     0.503
Plim_1729
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: hypothetical protein.
  
    0.490
Plim_2283
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_5917 hypothetical protein.
  
     0.477
Plim_0322
PFAM: protein of unknown function DUF820.
  
     0.471
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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