Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2754Hypothetical protein. (323 aa)    
Predicted Functional Partners:
Plim_1412
PFAM: protein of unknown function DUF455; KEGG: scl:sce0972 hypothetical protein.
 
     0.777
Plim_2753
Serine/threonine protein kinase-related protein.
       0.773
Plim_1336
Membrane protein-like protein.
  
     0.738
Plim_3516
Hypothetical protein.
  
     0.729
Plim_3766
Hypothetical protein.
  
     0.721
Plim_3885
O-antigen polymerase; KEGG: proteophosphoglycan ppg4.
  
     0.712
Plim_4071
Spermine synthase.
  
     0.708
Plim_3354
TPR repeat-containing protein.
  
     0.687
Plim_1805
Hypothetical protein.
  
     0.681
Plim_0394
KEGG: mno:Mnod_7207 hypothetical protein.
  
     0.662
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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