Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_2765ABC transporter related protein. (695 aa)    
Predicted Functional Partners:
Plim_1116
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_2113 ABC transporter related.
 
    
0.909
Plim_0935
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: ppd:Ppro_3025 ABC transporter related.
  
  
 
0.908
Plim_2866
ABC transporter related protein.
 
    
0.758
Plim_0462
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: Beta-ketoacyl synthase; KR domain protein; Acyl transferase; short-chain dehydrogenase/reductase SDR; KEGG: gur:Gura_2012 erythronolide synthase.
   
 0.679
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
    
 0.649
Plim_2333
PFAM: Heat shock protein 70; KEGG: bca:BCE_1142 DnaK protein, truncation.
  
  0.631
Plim_2026
Toxin secretion ABC transporter ATP-binding protein; KEGG: mfa:Mfla_2223 ABC transporter related.
   
   0.608
Plim_1501
PFAM: Heat shock protein 70; KEGG: bca:BCE_1142 DnaK protein, truncation.
  
  0.603
Plim_3027
Heat shock protein 70.
  
  0.594
Plim_3585
Heat shock protein 70.
  
  0.592
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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