STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2823Hypothetical protein. (388 aa)    
Predicted Functional Partners:
Plim_2378
KEGG: hypothetical protein.
  
     0.599
Plim_0225
KEGG: sde:Sde_3807 hypothetical protein.
  
     0.529
Plim_2822
methionine-R-sulfoxide reductase.
       0.488
Plim_3354
TPR repeat-containing protein.
  
     0.465
Plim_3846
Parallel beta-helix repeat protein; KEGG: hypothetical protein LOC100134400.
 
     0.454
Plim_2824
Protein of unknown function DUF1559.
       0.447
Plim_2825
Hypothetical protein.
       0.447
Plim_3588
Endonuclease/exonuclease/phosphatase.
  
     0.433
Plim_3243
Hypothetical protein.
  
     0.432
Plim_3969
GCN5-related N-acetyltransferase.
  
     0.420
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.