STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2841Radical SAM domain protein; KEGG: proteophosphoglycan 5. (410 aa)    
Predicted Functional Partners:
Plim_2842
Cobalamin synthesis protein P47K.
 
     0.871
Plim_2915
Protein of unknown function DUF116.
 
   
 0.811
Plim_3312
4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
     0.769
Plim_0250
SMART: Pyrrolo-quinoline quinone; KEGG: cps:CPS_4249 outer membrane protein assembly complex subunit YfgL.
  
    0.751
Plim_3506
WD40-like protein repeat-like protein.
  
    0.748
Plim_2376
SMART: Pyrrolo-quinoline quinone; KEGG: mag:amb1343 WD-40 repeat-containing protein.
  
    0.747
Plim_0903
Squalene cyclase-like protein; KEGG: squalene-hopene-cyclase, putative; K06045 squalene-hopene cyclase.
 
   
 0.738
Plim_3329
Conserved hypothetical protein.
  
     0.737
Plim_0221
SMART: Pyrrolo-quinoline quinone; KEGG: mmr:Mmar10_1202 pyrrolo-quinoline quinone.
  
    0.736
Plim_4007
Hypothetical protein.
  
    0.730
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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