STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2846Glycosyl hydrolase family 98 putative carbohydrate binding module. (624 aa)    
Predicted Functional Partners:
Plim_3028
Phosphodiesterase/alkaline phosphatase D-like protein.
  
     0.724
Plim_2019
PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A2712 major facilitator transporter.
  
     0.705
Plim_2527
Dipeptidyl aminopeptidase/acylaminoacyl- peptidase-like protein; KEGG: pmr:PMI1215 hypothetical protein.
  
    0.686
Plim_2370
KEGG: sus:Acid_5886 outer membrane efflux protein.
  
    0.560
Plim_2888
Hypothetical protein; KEGG: GK17577 gene product from transcript GK17577- RA.
  
     0.555
Plim_1581
PFAM: PA14 domain protein; SMART: PA14 domain protein; KEGG: rde:RD1_3724 hypothetical protein.
  
    0.533
Plim_0259
Hypothetical protein; KEGG: acp:A2cp1_0259 tetratricopeptide TPR_2 repeat protein.
  
     0.531
Plim_2090
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.503
Plim_1693
PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: dol:Dole_0612 hemolysin-type calcium-binding region.
  
    0.501
Plim_3664
Hypothetical protein.
  
    0.458
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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