STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2882Tetratricopeptide TPR_2 repeat protein; KEGG: predicted gene, 100042430. (767 aa)    
Predicted Functional Partners:
Plim_1858
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: predicted protein.
  
     0.688
Plim_3518
Tetratricopeptide TPR_2 repeat protein.
 
     0.664
Plim_2188
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: BRCT domain protein; Tetratricopeptide domain protein; KEGG: scl:sce3861 MerR family transcriptional regulator.
 
   
 0.655
Plim_2357
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mno:Mnod_2951 peptidase C14 caspase catalytic subunit P20.
 
     0.645
Plim_3244
Tetratricopeptide TPR_2 repeat protein.
  
     0.637
Plim_2561
Tetratricopeptide TPR_2 repeat protein.
  
     0.621
Plim_1771
PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; SMART: Tetratricopeptide domain protein; KEGG: pca:Pcar_3102 TPR repeat-containing protein.
  
     0.571
Plim_0431
PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein.
  
     0.569
Plim_2881
Hypothetical protein.
       0.545
Plim_2883
Conserved hypothetical protein.
       0.509
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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