Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2888Hypothetical protein; KEGG: GK17577 gene product from transcript GK17577- RA. (431 aa)    
Predicted Functional Partners:
Plim_2317
KEGG: net:Neut_1053 hypothetical protein.
  
     0.603
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
     0.555
Plim_2846
Glycosyl hydrolase family 98 putative carbohydrate binding module.
  
     0.555
Plim_2887
PBS lyase HEAT domain protein repeat-containing protein; KEGG: similar to ABI gene family, member 3 (NESH) binding protein.
 
     0.544
Plim_0670
KEGG: noc:Noc_0152 secretion protein HlyD.
  
     0.537
Plim_3439
Hypothetical protein.
  
     0.519
Plim_2239
PFAM: protein of unknown function DUF58; KEGG: gur:Gura_0188 hypothetical protein.
  
     0.500
Plim_3351
Hypothetical protein.
  
     0.497
Plim_0406
Hypothetical protein; KEGG: gme:Gmet_3367 general secretion pathway protein G.
  
     0.481
Plim_3291
RecA-superfamily implicated in signal transduction ATPase-like protein.
  
     0.475
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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