Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_2895General secretion pathway protein G. (160 aa)    
Predicted Functional Partners:
Plim_0032
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein.
  
     0.761
Plim_4084
Protein of unknown function DUF1559.
  
     0.685
Plim_3621
Protein of unknown function DUF1559.
  
     0.676
Plim_0156
PFAM: type II secretion system protein; KEGG: afw:Anae109_0728 general secretion pathway protein F.
 
    0.607
Plim_2549
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein.
  
     0.573
Plim_3688
Type II and III secretion system protein.
 
    0.570
Plim_4189
Type II secretion system protein E; KEGG: predicted gene, 100042430.
 
   0.556
Plim_1294
PFAM: type II secretion system protein; KEGG: ppr:PBPRA3279 putative MSHA biogenesis protein MshG.
  
    0.551
Plim_3388
Type II secretion system protein.
  
    0.539
Plim_3708
Protein of unknown function DUF1559.
  
     0.538
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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