STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2905Xylanase. (333 aa)    
Predicted Functional Partners:
Plim_2636
Sialate O-acetylesterase.
  
     0.725
Plim_0708
PFAM: putative esterase; KEGG: sus:Acid_2103 putative esterase.
 
     0.642
Plim_2906
MOSC domain containing protein.
       0.631
pyrF
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
    
  0.617
Plim_2903
Cobalamin (vitamin B12) biosynthesis CbiX protein.
       0.594
Plim_1922
Dipeptidyl aminopeptidase/acylaminoacyl- peptidase-like protein; KEGG: hch:HCH_01563 esterase/lipase.
  
     0.583
Plim_3779
Pectate lyase.
 
   
 0.544
Plim_1434
Esterase/lipase-like protein; KEGG: bra:BRADO1504 putative para-nitrobenzyl esterase.
  
     0.503
Plim_1672
6-deoxyerythronolide-B synthase., (Acyl-carrier- protein) S-malonyltransferase; PFAM: Beta-ketoacyl synthase; peptidase C45 acyl- coenzyme A:6-aminopenicillanic acid acyl-transferase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; KEGG: acp:A2cp1_4042 beta-ketoacyl synthase.
  
 
 0.456
Plim_3171
Esterase/lipase-like protein.
  
     0.436
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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