STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2911Diacylglycerol kinase. (146 aa)    
Predicted Functional Partners:
Plim_0043
KEGG: hypothetical protein.
     
  0.900
Plim_0720
PFAM: phosphatidate cytidylyltransferase; KEGG: plu:plu4775 hypothetical protein.
     
  0.900
Plim_3130
Phospholipid/glycerol acyltransferase.
     
 0.900
Plim_3315
Phosphatidate cytidylyltransferase.
     
  0.900
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: gbm:Gbem_0008 NAD-dependent glycerol-3- phosphate dehydrogenase domain protein.
     
 0.824
Plim_1578
PFAM: 3-dehydroquinate synthase; iron-containing alcohol dehydrogenase; KEGG: scl:sce5394 glycerol-1-phosphate dehydrogenase (NAD(P)(+)).
     
  0.800
Plim_2910
Metallophosphoesterase.
       0.773
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.742
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
    0.473
Plim_2909
Peroxiredoxin; Belongs to the glutathione peroxidase family.
       0.406
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.