STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2914Alanine racemase domain protein. (374 aa)    
Predicted Functional Partners:
Plim_1666
PFAM: isochorismatase hydrolase; KEGG: sus:Acid_1892 isochorismatase hydrolase.
  
    0.557
Plim_3031
N-acyl-D-amino-acid deacylase; KEGG: similar to splicing coactivator subunit SRm300.
 
   
 0.544
Plim_2908
Endoribonuclease L-PSP.
 
   
 0.522
Plim_2913
N-acetylglucosamine-6-phosphate deacetylase.
 
     0.519
Plim_1207
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6145 oxidoreductase domain- containing protein.
  
     0.513
Plim_0037
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_2550 oxidoreductase domain- containing protein.
  
     0.476
Plim_3819
Oxidoreductase domain protein.
  
     0.463
Plim_2915
Protein of unknown function DUF116.
       0.461
Plim_2951
nucleoside:H symporter.
 
    0.451
Plim_0111
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_1336 putative streptomycin biosynthesis protein StrI.
  
     0.447
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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