STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_2915Protein of unknown function DUF116. (634 aa)    
Predicted Functional Partners:
Plim_0265
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.948
Plim_3117
NUDIX hydrolase.
  
 
 0.920
ispH
Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
 
 0.918
Plim_0149
Trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase; KEGG: csa:Csal_0473 trans- hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
  
 
0.913
Plim_2441
PFAM: Polyprenyl synthetase; KEGG: ppd:Ppro_2404 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 
0.910
Plim_2244
PFAM: Squalene/phytoene synthase; KEGG: sus:Acid_1266 farnesyl-diphosphate farnesyltransferase.
  
 0.884
Plim_2841
Radical SAM domain protein; KEGG: proteophosphoglycan 5.
 
   
 0.818
Plim_0903
Squalene cyclase-like protein; KEGG: squalene-hopene-cyclase, putative; K06045 squalene-hopene cyclase.
 
  
 0.807
Plim_3312
4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
     0.775
Plim_1863
SMART: Pyrrolo-quinoline quinone; KEGG: pla:Plav_3493 pyrrolo-quinoline quinone.
  
     0.770
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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