STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2933Sulphate transporter. (440 aa)    
Predicted Functional Partners:
Plim_0462
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: Beta-ketoacyl synthase; KR domain protein; Acyl transferase; short-chain dehydrogenase/reductase SDR; KEGG: gur:Gura_2012 erythronolide synthase.
    
 
 0.805
Plim_2932
Hypothetical protein.
       0.773
Plim_0444
Hypothetical protein; KEGG: hha:Hhal_0803 dual specificity protein phosphatase.
    
   0.749
Plim_0424
PFAM: Cytochrome b/b6 domain; KEGG: scl:sce0365 cytochrome b6.
    
   0.719
Plim_3617
Ankyrin.
  
 
   0.547
Plim_3977
TPR repeat-containing protein; KEGG: SRRM2; serine/arginine repetitive matrix 2.
  
     0.539
Plim_2931
Esterase/lipase-like protein.
   
   0.533
Plim_3015
Metallophosphoesterase.
    
   0.515
Plim_3342
DNA repair exonuclease-like protein.
    
   0.515
Plim_3973
Metallophosphoesterase.
    
   0.515
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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