STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2933Sulphate transporter. (440 aa)    
Predicted Functional Partners:
Plim_0462
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: Beta-ketoacyl synthase; KR domain protein; Acyl transferase; short-chain dehydrogenase/reductase SDR; KEGG: gur:Gura_2012 erythronolide synthase.
    
 
 0.928
Plim_0424
PFAM: Cytochrome b/b6 domain; KEGG: scl:sce0365 cytochrome b6.
    
   0.916
Plim_0444
Hypothetical protein; KEGG: hha:Hhal_0803 dual specificity protein phosphatase.
    
   0.904
Plim_2932
Hypothetical protein.
       0.773
Plim_0270
KEGG: afr:AFE_2618 NADH-quinone oxidoreductase, M subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
 
 0.735
Plim_3869
Proton-translocating NADH-quinone oxidoreductase, chain M.
  
 
 0.735
Plim_3617
Ankyrin.
  
 
 
 0.689
Plim_3015
Metallophosphoesterase.
   
   0.687
Plim_3342
DNA repair exonuclease-like protein.
   
   0.687
Plim_3973
Metallophosphoesterase.
   
   0.687
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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