Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2944Pyrrolo-quinoline quinone. (934 aa)    
Predicted Functional Partners:
Plim_2941
Pyrrolo-quinoline quinone.
 
     0.780
Plim_3329
Conserved hypothetical protein.
  
     0.771
Plim_0100
PFAM: protein of unknown function DUF214; KEGG: ade:Adeh_2042 hypothetical protein.
  
     0.768
Plim_3326
Aldehyde Dehydrogenase.
  
     0.764
Plim_3330
Major facilitator superfamily MFS_1.
  
     0.755
Plim_2475
PFAM: glycosyl transferase group 1; KEGG: lpn:lpg2900 CapM protein, capsular polysaccharide biosynthesis.
  
     0.742
Plim_3312
4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
     0.727
Plim_1036
AmoP; SMART: AMOP; KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.721
Plim_2915
Protein of unknown function DUF116.
  
     0.719
Plim_3067
YD repeat protein; KEGG: bpm:BURPS1710b_1103 hypothetical protein.
  
     0.718
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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