STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2967Helix-hairpin-helix DNA-binding class 1. (150 aa)    
Predicted Functional Partners:
Plim_2966
Peptidase U32; KEGG: proteophosphoglycan 5.
       0.765
Plim_2271
PFAM: peptidase A24A prepilin type IV; KEGG: vvu:VV1_1623 type 4 prepilin-like proteins leader peptide processing enzyme.
  
  
 0.673
Plim_1574
PFAM: peptidase A24A domain protein; KEGG: aba:Acid345_1591 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A.
   
  
 0.627
Plim_1841
PFAM: peptidase A24A domain protein; KEGG: afr:AFE_0186 type IV pilus prepilin peptidase PilD.
   
  
 0.627
Plim_2474
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: mxa:MXAN_2626 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.613
Plim_2626
Single-strand binding protein.
  
  
 0.485
Plim_0428
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rce:RC1_0993 transcriptional regulatory protein YycF.
  
    0.477
Plim_2968
Hypothetical protein.
       0.415
Plim_3203
Amidophosphoribosyltransferase family protein.
  
  
 0.406
adk-2
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
       0.404
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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