STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2995Nuz. (279 aa)    
Predicted Functional Partners:
Plim_3843
Leucine-rich repeat, ribonuclease inhibitor subtype.
  
     0.677
Plim_0381
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; KEGG: mfa:Mfla_2322 sigma 70 (RpoD).
  
     0.626
Plim_2996
Oxidoreductase domain protein.
       0.608
Plim_3847
Glycoside hydrolase family 10.
  
     0.608
Plim_2997
Hypothetical protein.
       0.598
Plim_3001
Von Willebrand factor type A.
  
     0.535
Plim_0602
PFAM: RNA polymerase alpha subunit domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_1087 TPR repeat-containing protein.
  
    0.531
Plim_1543
KEGG: hypothetical protein; K03785 3-dehydroquinate dehydratase I.
 
     0.471
Plim_0071
PFAM: phosphatidate cytidylyltransferase; KEGG: hypothetical protein.
  
     0.458
Plim_1443
KEGG: scl:sce0916 hypothetical protein.
  
     0.458
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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