Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_3052Major facilitator superfamily MFS_1. (458 aa)    
Predicted Functional Partners:
Plim_3055
precorrin-3B synthase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
    
 0.939
Plim_3054
Molybdopterin oxidoreductase; KEGG: bpm:BURPS1710b_1218 putative hydrolase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.833
Plim_3053
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
   
 0.640
Plim_1555
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dps:DP1734 uroporphyrinogen III synthase/methyltransferase (HemD+CobA).
  
  
 0.575
Plim_3051
Hypothetical protein.
       0.571
Plim_0864
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: bsu:BSU14300 molybdopterin converting factor (subunit 2).
 
  
 0.522
Plim_3983
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
     
 0.500
Plim_3813
Oxidoreductase FAD/NAD(P)-binding domain protein; Belongs to the globin family.
     
 0.467
Plim_3056
FAD-binding domain protein.
     
 0.464
Plim_1920
Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
 
     0.405
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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