Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_30534Fe-4S ferredoxin iron-sulfur binding domain protein. (594 aa)    
Predicted Functional Partners:
Plim_3054
Molybdopterin oxidoreductase; KEGG: bpm:BURPS1710b_1218 putative hydrolase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.995
Plim_3983
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
 
 
0.977
Plim_1366
TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; KEGG: sde:Sde_2411 histidine kinase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.967
Plim_3984
Polysulphide reductase NrfD.
 
 
 0.963
Plim_0191
PFAM: formyl transferase domain protein; KEGG: csa:Csal_2073 formyltetrahydrofolate deformylase.
     
  0.900
Plim_1421
PFAM: glutamate synthase alpha subunit domain protein; KEGG: msl:Msil_2403 formylmethanofuran dehydrogenase subunit C.
     
  0.900
Plim_1687
TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: Amidohydrolase 3; KEGG: noc:Noc_0024 DNA/RNA non-specific endonuclease.
     
  0.900
Plim_2299
Formylmethanofuran dehydrogenase subunit B-like protein; KEGG: noc:Noc_0025 formylmethanofuran dehydrogenase.
     
  0.900
Plim_3986
Conserved hypothetical protein.
 
 
 
 0.830
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
     
 0.823
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.