STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3110Protein of unknown function DUF1559. (353 aa)    
Predicted Functional Partners:
Plim_3109
Hypothetical protein.
       0.592
Plim_0076
TIGRFAM: type IV pilus assembly protein PilM; KEGG: afw:Anae109_0686 type IV pilus assembly protein PilM.
  
     0.581
Plim_0723
Hypothetical protein.
  
     0.544
Plim_0058
KEGG: mxa:MXAN_5780 putative efflux ABC transporter, permease protein PilI.
  
     0.484
Plim_3249
Hypothetical protein.
  
     0.451
Plim_3749
ABC transporter related protein; KEGG: scl:sce_pseudo_13 pseudogene.
  
     0.426
Plim_0727
KEGG: aba:Acid345_2357 hypothetical protein.
  
     0.416
Plim_3639
Type II secretory pathway component PulK-like protein; KEGG: hypothetical protein.
  
   0.411
Plim_3351
Hypothetical protein.
  
     0.401
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.