STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3116Tryptophan halogenase. (417 aa)    
Predicted Functional Partners:
Plim_3117
NUDIX hydrolase.
 
  
 0.588
Plim_2943
Pyrrolo-quinoline quinone.
  
     0.562
Plim_2915
Protein of unknown function DUF116.
 
 
 0.542
Plim_3329
Conserved hypothetical protein.
  
     0.539
Plim_3326
Aldehyde Dehydrogenase.
  
     0.524
Plim_1863
SMART: Pyrrolo-quinoline quinone; KEGG: pla:Plav_3493 pyrrolo-quinoline quinone.
  
     0.508
Plim_0221
SMART: Pyrrolo-quinoline quinone; KEGG: mmr:Mmar10_1202 pyrrolo-quinoline quinone.
  
     0.499
Plim_2733
Hypothetical protein.
  
     0.492
Plim_2369
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: aba:Acid345_4052 2-acyl-glycerophospho- ethanolamine acyltransferase.
  
  
 0.489
Plim_1930
WD40-like protein repeat-like protein; KEGG: maq:Maqu_1130 pyrrolo-quinoline quinone.
  
     0.468
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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