Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3168Spore coat protein CotH; KEGG: hypothetical protein. (661 aa)    
Predicted Functional Partners:
Plim_3170
Hypothetical protein.
 
     0.871
Plim_3169
Hypothetical protein.
 
     0.791
Plim_2418
KEGG: swi:Swit_3221 hypothetical protein.
  
     0.733
Plim_2050
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.607
Plim_1970
PFAM: GCN5-related N-acetyltransferase; KEGG: aba:Acid345_4211 GCN5-related N- acetyltransferase.
  
     0.545
Plim_1890
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_6186 hypothetical protein.
  
     0.519
Plim_2485
PFAM: Protein of unknown function DUF1588; PA14 domain protein; Protein of unknown function DUF1592; SMART: PA14 domain protein; KEGG: scl:sce1022 hypothetical protein.
  
     0.517
Plim_3771
Dehydratase, YjhG/YagF family; Belongs to the IlvD/Edd family.
  
     0.513
Plim_3249
Hypothetical protein.
  
     0.502
Plim_1609
PFAM: protein of unknown function DUF820; KEGG: scl:sce6780 hypothetical protein.
  
     0.496
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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