STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3173Beta-lactamase domain protein. (251 aa)    
Predicted Functional Partners:
Plim_2520
PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: pat:Patl_0274 redoxin.
  
     0.533
Plim_1059
Hypothetical protein; KEGG: bmj:BMULJ_05821 IS402 transposase.
  
     0.518
Plim_2974
Metallophosphoesterase.
  
     0.481
Plim_2043
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: bpy:Bphyt_0018 RNA-directed DNA polymerase (reverse transcriptase).
  
     0.463
Plim_3174
Hypothetical protein.
       0.429
Plim_0294
PFAM: protein of unknown function DUF1061; KEGG: bcb:BCB4264_A3273 hypothetical protein.
  
     0.422
Plim_3172
Hypothetical protein.
       0.418
Plim_0673
PFAM: Phytanoyl-CoA dioxygenase; KEGG: sus:Acid_3663 phytanoyl-CoA dioxygenase.
  
     0.407
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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