STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3208Gamma-glutamyltransferase; KEGG: hypothetical protein LOC750510. (577 aa)    
Predicted Functional Partners:
Plim_2569
5-oxoprolinase (ATP-hydrolyzing).
    
 0.923
Plim_2909
Peroxiredoxin; Belongs to the glutathione peroxidase family.
     
 0.915
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
     
 0.915
Plim_2694
Glutamate synthase (NADH).
     
 0.871
Plim_1670
PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: dal:Dalk_3943 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.866
Plim_4195
Aldehyde Dehydrogenase.
   
 
 0.866
Plim_0683
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: afw:Anae109_4400 glutamine synthetase, type I.
     
 0.831
Plim_1921
PFAM: glutamine synthetase catalytic region; KEGG: dvl:Dvul_1805 glutamine synthetase, catalytic region.
    
  0.808
Plim_2693
Glutamate synthase, NADH/NADPH, small subunit.
     
 0.808
Plim_3854
Phosphoribosylformylglycinamidine synthase.
    
  0.805
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.