STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3227Inosine/uridine-preferring nucleoside hydrolase. (350 aa)    
Predicted Functional Partners:
Plim_2940
Protein of unknown function DUF1080.
 
 
   0.760
Plim_1726
Hypothetical protein; KEGG: sus:Acid_7102 putative xylan esterase.
  
     0.687
Plim_0111
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_1336 putative streptomycin biosynthesis protein StrI.
  
    0.671
Plim_0046
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_4919 hypothetical protein.
  
 
   0.600
Plim_4136
Hypothetical protein.
  
     0.541
Plim_2668
Hypothetical protein.
  
     0.519
Plim_2979
Hypothetical protein.
 
   
 0.509
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.491
Plim_4012
Oxidoreductase domain protein.
  
    0.480
Plim_4107
Hypothetical protein.
 
   
 0.473
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.