STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3228Protein of unknown function DUF1501. (499 aa)    
Predicted Functional Partners:
Plim_3229
Protein of unknown function DUF1549.
 
     0.912
Plim_0378
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: pat:Patl_0815 hypothetical protein.
  
     0.775
Plim_0517
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_6290 hypothetical protein.
  
     0.775
Plim_0775
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_6186 hypothetical protein.
  
     0.775
Plim_1526
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_6547 hypothetical protein.
  
     0.775
Plim_1739
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_1145 hypothetical protein.
  
     0.775
Plim_1796
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_0974 hypothetical protein.
  
     0.775
Plim_2165
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_4059 hypothetical protein.
  
     0.775
Plim_2950
Protein of unknown function DUF1549.
  
     0.775
Plim_3816
Protein of unknown function DUF1549.
  
     0.775
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.