STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3241Protein of unknown function DUF1588; KEGG: proteophosphoglycan 5. (866 aa)    
Predicted Functional Partners:
Plim_3240
Protein of unknown function DUF1552; KEGG: proteophosphoglycan 5.
 
     0.929
Plim_0128
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_4306 hypothetical protein.
 
     0.775
Plim_0286
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_2032 hypothetical protein.
 
     0.775
Plim_0946
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_2098 hypothetical protein.
 
     0.774
Plim_2494
PFAM: protein of unknown function DUF1552; KEGG: scl:sce0554 putative secreted protein.
 
     0.774
Plim_0569
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_0842 hypothetical protein.
 
     0.766
Plim_1450
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.742
Plim_0883
KEGG: sus:Acid_5331 hypothetical protein.
  
     0.739
Plim_1449
KEGG: sus:Acid_5040 hypothetical protein.
  
     0.722
Plim_1151
PFAM: protein of unknown function DUF1549; WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.710
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.