STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_3244Tetratricopeptide TPR_2 repeat protein. (699 aa)    
Predicted Functional Partners:
Plim_1858
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: predicted protein.
  
     0.699
Plim_0431
PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein.
  
     0.689
Plim_2188
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: BRCT domain protein; Tetratricopeptide domain protein; KEGG: scl:sce3861 MerR family transcriptional regulator.
 
   
 0.647
Plim_2882
Tetratricopeptide TPR_2 repeat protein; KEGG: predicted gene, 100042430.
  
     0.637
Plim_3518
Tetratricopeptide TPR_2 repeat protein.
  
     0.541
Plim_2357
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mno:Mnod_2951 peptidase C14 caspase catalytic subunit P20.
  
     0.490
Plim_1622
PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1110 glycosyl transferase family 2.
  
     0.487
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.486
Plim_2561
Tetratricopeptide TPR_2 repeat protein.
  
     0.464
Plim_3243
Hypothetical protein.
       0.424
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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