STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3253Endonuclease/exonuclease/phosphatase. (253 aa)    
Predicted Functional Partners:
Plim_0640
PFAM: aminotransferase class V; KEGG: gme:Gmet_1300 cysteine desulphurase-like protein.
    
   0.549
Plim_1322
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.549
Plim_1607
PFAM: aminotransferase class V; KEGG: scl:sce8130 selenocysteine lyase / isopenicillin N epimerase.
    
   0.549
Plim_3252
Peptidylprolyl isomerase FKBP-type.
 
     0.487
Plim_0446
Phospholipase D/Transphosphatidylase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
 
    0.462
Plim_0278
PFAM: amino acid-binding ACT domain protein; KEGG: dps:DP0780 hypothetical protein.
  
     0.435
Plim_1277
PFAM: Colicin V production protein; KEGG: rfr:Rfer_2684 colicin V production protein.
  
    0.430
Plim_3850
Hypothetical protein.
 
    0.410
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.