STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_3285Tfp pilus assembly protein ATPase PilM-like protein. (415 aa)    
Predicted Functional Partners:
Plim_3284
Fimbrial assembly family protein.
       0.773
Plim_3286
Hypothetical protein.
     
 0.764
Plim_3287
Hypothetical protein.
       0.749
Plim_3288
Hypothetical protein.
       0.749
Plim_3289
Hypothetical protein.
       0.741
Plim_0407
PFAM: type II secretion system protein; KEGG: sfu:Sfum_0118 type II secretion system protein.
 
 
 
 0.538
Plim_0425
PFAM: type II secretion system protein; KEGG: gur:Gura_2680 type II secretion system protein.
 
 
 
 0.525
Plim_0409
KEGG: twitching motility protein; K02669 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
   
 0.502
Plim_0156
PFAM: type II secretion system protein; KEGG: afw:Anae109_0728 general secretion pathway protein F.
 
 
 
 0.442
Plim_1933
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: scl:sce4468 twitching motility protein.
 
   
 0.438
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.