STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Plim_3297Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ. (175 aa)    
Predicted Functional Partners:
Plim_3121
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ.
  
  
  0.976
Plim_3124
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ.
  
  
  0.976
Plim_3893
Short-chain dehydrogenase/reductase SDR.
 
 
 0.953
Plim_2566
Malonyl CoA-acyl carrier protein transacylase.
 
  
 0.924
Plim_3123
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.923
Plim_0880
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hypothetical protein.
   
 
  0.902
Plim_1144
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr5634 putative 3-oxoacyl-[acyl-carrier- protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
  0.902
Plim_1674
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: lpp:lpp0423 enoyl-(acyl carrier protein) reductase.
   
 
  0.902
Plim_2034
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: oan:Oant_0571 3-oxoacyl-(acyl-carrier- protein) reductase.
   
 
  0.902
Plim_3965
Short-chain dehydrogenase/reductase SDR.
   
 
  0.902
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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