Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_3300Exporter of the RND superfamily protein-like protein. (967 aa)    
Predicted Functional Partners:
Plim_0154
SMART: HTTM domain protein; KEGG: bba:Bd2937 hypothetical protein.
  
     0.700
Plim_0574
PFAM: Haemagluttinin repeat-containing protein; KEGG: dal:Dalk_0372 filamentous hemagglutinin family outer membrane protein.
 
     0.566
Plim_2201
KEGG: bja:blr0521 hypothetical protein.
  
     0.554
Plim_4071
Spermine synthase.
  
     0.551
Plim_0278
PFAM: amino acid-binding ACT domain protein; KEGG: dps:DP0780 hypothetical protein.
  
     0.507
Plim_3807
MotA/TolQ/ExbB proton channel.
  
     0.495
Plim_3586
Tetratricopeptide TPR_2 repeat protein.
  
     0.477
Plim_3348
Hopanoid biosynthesis associated RND transporter like protein HpnN.
  
     0.441
Plim_1805
Hypothetical protein.
  
     0.437
Plim_3766
Hypothetical protein.
  
     0.427
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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