Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_33124Fe-4S ferredoxin iron-sulfur binding domain protein. (368 aa)    
Predicted Functional Partners:
Plim_2915
Protein of unknown function DUF116.
  
     0.775
Plim_1863
SMART: Pyrrolo-quinoline quinone; KEGG: pla:Plav_3493 pyrrolo-quinoline quinone.
  
     0.772
Plim_0598
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: son:SO_3309 outer membrane protein assembly complex subunit YfgL.
  
     0.769
Plim_2841
Radical SAM domain protein; KEGG: proteophosphoglycan 5.
  
     0.769
Plim_3506
WD40-like protein repeat-like protein.
  
     0.769
Plim_0221
SMART: Pyrrolo-quinoline quinone; KEGG: mmr:Mmar10_1202 pyrrolo-quinoline quinone.
  
     0.767
Plim_3329
Conserved hypothetical protein.
  
     0.766
Plim_2943
Pyrrolo-quinoline quinone.
  
     0.765
Plim_0670
KEGG: noc:Noc_0152 secretion protein HlyD.
  
     0.764
Plim_2842
Cobalamin synthesis protein P47K.
  
     0.764
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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