Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Plim_3331PpiC-type peptidyl-prolyl cis-trans isomerase. (415 aa)    
Predicted Functional Partners:
Plim_3586
Tetratricopeptide TPR_2 repeat protein.
 
 
 0.848
Plim_0726
KEGG: lip:LI1093 outer membrane protein and related peptidoglycan-associated (LipO)proteins.
  
 
 0.809
Plim_2365
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rty:RT0150 outer membrane protein Omp1.
 
 
 0.635
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
  
   
 0.551
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.535
Plim_2231
SMART: AAA ATPase; KEGG: sfu:Sfum_0884 AAA ATPase.
  
     0.533
Plim_0030
PFAM: protein of unknown function DUF164; KEGG: dol:Dole_2149 hypothetical protein.
  
     0.513
Plim_2317
KEGG: net:Neut_1053 hypothetical protein.
  
 
 
 0.486
Plim_2805
Outer membrane efflux protein.
  
   
 0.475
Plim_0854
AAA ATPase; KEGG: gbm:Gbem_0741 AAA ATPase.
  
     0.446
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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