Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_3348Hopanoid biosynthesis associated RND transporter like protein HpnN. (1045 aa)    
Predicted Functional Partners:
Plim_3361
Hopanoid biosynthesis associated radical SAM protein HpnH.
 
   
 0.771
Plim_1904
KEGG: aba:Acid345_1740 squalene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: Prenyltransferase/squalene oxidase.
 
     0.759
Plim_1743
PFAM: purine or other phosphorylase family 1; KEGG: noc:Noc_1319 purine phosphorylase family protein 1.
 
     0.701
Plim_1021
Exporter of the RND superfamily protein-like protein; KEGG: vok:COSY_0866 hypothetical protein.
  
     0.665
Plim_3349
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.645
Plim_0903
Squalene cyclase-like protein; KEGG: squalene-hopene-cyclase, putative; K06045 squalene-hopene cyclase.
 
     0.601
Plim_2465
PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_2468 putative transport protein.
  
     0.601
Plim_3319
Similar to plant photosystem II stability/assembly factor.
 
  
 0.562
Plim_4190
NolW domain protein; KEGG: similar to ELKS/RAB6-interacting/CAST family member 2.
  
     0.559
Plim_3291
RecA-superfamily implicated in signal transduction ATPase-like protein.
  
     0.553
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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